[Sunday June 19 10:30:09 2011] [Notice] Using the settings file ./sample_projects/sample_project_3/project_settings_a.conf.
[Sunday June 19 10:30:09 2011] [Notice] Assigning COG categories to ORF translations from reference genome sequence in ./sample_projects/sample_project_3/reference_genome.
[Sunday June 19 10:30:09 2011] [Notice] COG categories have been written to ./sample_projects/sample_project_3/features.
[Sunday June 19 10:30:09 2011] [Notice] Creating CGView XML files.
[Sunday June 19 10:31:53 2011] [Notice] CGView XML files have been created in ./sample_projects/sample_project_3/maps/cgview_xml.
[Sunday June 19 10:31:53 2011] [Notice] Creating CGView maps.
[Sunday June 19 10:32:06 2011] [Notice] CGView maps have been created in ./sample_projects/sample_project_3/maps.
[Sunday June 19 10:32:06 2011] [Notice] Using the settings file ./sample_projects/sample_project_3/project_settings_b.conf.
[Sunday June 19 10:32:06 2011] [Notice] Assigning COG categories to CDS translations from reference genome sequence in ./sample_projects/sample_project_3/reference_genome.
[Sunday June 19 14:08:50 2011] [Notice] COG categories have been written to ./sample_projects/sample_project_3/features.
[Sunday June 19 14:08:50 2011] [Notice] Creating CGView XML files.
[Sunday June 19 14:12:37 2011] [Notice] CGView XML files have been created in ./sample_projects/sample_project_3/maps/cgview_xml.
[Sunday June 19 14:12:37 2011] [Notice] Creating CGView maps.
[Sunday June 19 14:12:54 2011] [Notice] CGView maps have been created in ./sample_projects/sample_project_3/maps.
[Sunday June 19 14:12:54 2011] [Notice] Using the settings file ./sample_projects/sample_project_3/project_settings_c.conf.
[Sunday June 19 14:12:54 2011] [Notice] Splitting the reference genome sequence in ./sample_projects/sample_project_3/reference_genome for BLAST searches.
[Sunday June 19 14:13:00 2011] [Notice] Reference genome sequence has been split and written to ./sample_projects/sample_project_3/reference_genome/split.
[Sunday June 19 14:13:00 2011] [Notice] Splitting the comparison genome sequences in ./sample_projects/sample_project_3/comparison_genomes for BLAST searches.
[Sunday June 19 14:13:04 2011] [Notice] Comparison genome sequences have been split and written to ./sample_projects/sample_project_3/comparison_genomes/split.
[Sunday June 19 14:13:04 2011] [Notice] Creating BLAST databases using the files in ./sample_projects/sample_project_3/comparison_genomes/split.
[Sunday June 19 14:13:05 2011] [Notice] The BLAST databases have been created in ./sample_projects/sample_project_3/blast/blast_db.
[Sunday June 19 14:13:05 2011] [Notice] Performing BLAST comparisons between sequences in ./sample_projects/sample_project_3/reference_genome/split and databases in ./sample_projects/sample_project_3/blast/blast_db.
[Sunday June 19 14:13:21 2011] [Notice] The BLAST results have been written to ./sample_projects/sample_project_3/blast/blast_results_local.
[Sunday June 19 14:13:21 2011] [Notice] Assigning COG categories to CDS translations from reference genome sequence in ./sample_projects/sample_project_3/reference_genome.
[Sunday June 19 14:13:21 2011] [Notice] Skipping COG assignment for './sample_projects/sample_project_3/reference_genome/NC_004463.gbk' using 'cds' since output already detected.
[Sunday June 19 14:13:21 2011] [Notice] COG categories have been written to ./sample_projects/sample_project_3/features.
[Sunday June 19 14:13:21 2011] [Notice] Creating CGView XML files.
[Sunday June 19 14:13:21 2011] [Notice] The following BLAST results will be drawn, from outside to center:
[Sunday June 19 14:13:21 2011] [Notice] NC_004463_DNA_vs_NC_000913.gbk_split_DNA_blastn
[Sunday June 19 14:17:14 2011] [Notice] CGView XML files have been created in ./sample_projects/sample_project_3/maps/cgview_xml.
[Sunday June 19 14:17:14 2011] [Notice] Creating CGView maps.
[Sunday June 19 14:18:00 2011] [Notice] CGView maps have been created in ./sample_projects/sample_project_3/maps.
