Source: multiqc
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:
 Andreas Tille <tille@debian.org>,
 Steffen Moeller <moeller@debian.org>,
Section: science
Priority: optional
Build-Depends:
 debhelper-compat (= 13),
 dh-sequence-python3,
 python3-all,
 python3-click,
 python3-coloredlogs <!nocheck>,
 python3-humanfriendly <!nocheck>,
 python3-humanize <!nocheck>,
 python3-importlib-metadata <!nocheck>,
 python3-jinja2,
 python3-lzstring,
 python3-markdown,
 python3-matplotlib,
 python3-numpy,
 python3-plotly <!nocheck>,
 python3-pyaml-env <!nocheck>,
 python3-requests,
 python3-rich <!nocheck>,
 python3-rich-click <!nocheck>,
 python3-setuptools,
 python3-spectra,
 python3-yaml,
Standards-Version: 4.7.2
Vcs-Browser: https://salsa.debian.org/med-team/multiqc
Vcs-Git: https://salsa.debian.org/med-team/multiqc.git
Homepage: https://multiqc.info/

Package: multiqc
Architecture: all
Depends:
 fonts-glyphicons-halflings,
 libjs-bootstrap,
 libjs-jquery,
 libjs-jquery-tablesorter,
 libjs-jquery-ui,
 python3-click,
 python3-coloredlogs,
 python3-humanfriendly,
 python3-jinja2,
 python3-lzstring,
 python3-markdown,
 python3-matplotlib,
 python3-numpy,
 python3-requests,
 python3-rich,
 python3-spectra,
 python3-yaml,
 ${misc:Depends},
 ${python3:Depends},
Recommends:
 libjs-filesaver,
 node-clipboard,
 pandoc,
 texlive-xetex,
Enhances:
 adapterremoval,
 afterqc,
 bamtools,
 bbmap,
 bcftools,
 bcl2fastq,
 biobambam2,
 biobloomtools,
 biscuit,
 bismark,
 bowtie,
 bowtie2,
 busco,
 clipandmerge,
 clusterflow,
 conpair,
 cutadapt,
 damageprofiler,
 dedup,
 deeptools,
 disambiguate,
 dragen,
 fastp,
 fastq-screen,
 fastqc,
 featurecounts,
 fgbio,
 flash,
 flexbar,
 gatk,
 goleft-indexcov,
 happy,
 hicexplorer,
 hicpro,
 hicup,
 hisat2,
 homer,
 htseq,
 interop,
 ivar,
 jellyfish,
 kaiju,
 kallisto,
 kat,
 kraken,
 leehom,
 longranger,
 macs2,
 malt,
 methylqa,
 minionqc,
 mirtop,
 mirtrace,
 mosdepth,
 mtnucratio,
 multivcfanalyzer,
 peddy,
 phantompeakqualtools,
 picard-tools,
 preseq,
 prokka,
 pycoqc,
 qorts,
 qualimap,
 quast,
 rna-seqc,
 rna-star,
 rockhopper,
 rsem,
 rseqc,
 salmon,
 samblaster,
 samtools,
 sargasso,
 seqyclean,
 sexdeterrmine,
 sickle,
 skewer,
 slamdunk,
 snpeff,
 snpsplit,
 somalier,
 sortmerna,
 stacks,
 supernova,
 theta2,
 trimmomatic,
 varscan2,
 vcftools,
 verifybamid,
Description: output integration for RNA sequencing across tools and samples
 The sequencing of DNA or RNA with current high-throughput technologies
 involves an array of tools and these are applied over a range of samples.
 It is easy to loose oversight. And gathering the data and forwarding
 them in a readable manner to the individuals who took the samples is
 a challenge for a tool in itself. Well. Here it is.
 MultiQC aggregates the output of multiple tools into a single report.
 .
 Reports are generated by scanning given directories for recognised log
 files. These are parsed and a single HTML report is generated summarising
 the statistics for all logs found. MultiQC reports can describe multiple
 analysis steps and large numbers of samples within a single plot, and
 multiple analysis tools making it ideal for routine fast quality control.
